Rcwl - An R interface to the Common Workflow Language
The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.
Last updated 24 days ago
softwareworkflowstepimmunooncology
5.52 score 2 packages 37 scripts 202 downloadsRcwlPipelines - Bioinformatics pipelines based on Rcwl
A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.
Last updated 24 days ago
softwareworkflowstepalignmentpreprocessingqualitycontroldnaseqrnaseqdataimportimmunooncology
5.07 score 1 packages 26 scripts 233 downloadsMACSr - MACS: Model-based Analysis for ChIP-Seq
The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.
Last updated 24 days ago
softwarechipseqatacseqimmunooncology
4.48 score 7 scripts 257 downloadsPAIRADISE - PAIRADISE: Paired analysis of differential isoform expression
This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.
Last updated 24 days ago
rnaseqdifferentialexpressionalternativesplicingstatisticalmethodimmunooncology
3.30 score 7 scripts 220 downloads