Rcwl - An R interface to the Common Workflow Language
The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.
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softwareworkflowstepimmunooncology
5.61 score 2 dependents 45 scripts 403 downloadsRcwlPipelines - Bioinformatics pipelines based on Rcwl
A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.
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softwareworkflowstepalignmentpreprocessingqualitycontroldnaseqrnaseqdataimportimmunooncology
5.20 score 1 dependents 35 scripts 401 downloadsMACSr - MACS: Model-based Analysis for ChIP-Seq
The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.
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softwarechipseqatacseqimmunooncology
4.43 score 27 scripts 396 downloadsPAIRADISE - PAIRADISE: Paired analysis of differential isoform expression
This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.
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rnaseqdifferentialexpressionalternativesplicingstatisticalmethodimmunooncology
4.05 score 56 scripts 518 downloadsMACSdata - Test datasets for the MACSr package
Test datasets from the MACS3 test examples are use in the examples of the `MACSr` package. All 9 datasets are uploaded to the `ExperimentHub`. The original data can be found at: https://github.com/macs3-project/MACS/.
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experimenthubexperimentdatachipseqdatadatapkg
2.30 score 1 scripts